PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0102s0094.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 266aa    MW: 28992.3 Da    PI: 4.6575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0102s0094.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-18131182155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  Kalax.0102s0094.1.p 131 SSYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAETAALAYDQAAFAIRG 182
                          67********.**********44465..************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-22131191IPR016177DNA-binding domain
CDDcd000188.23E-31131191No hitNo description
PfamPF008471.4E-12131182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-30132191IPR001471AP2/ERF domain
SMARTSM003801.4E-36132196IPR001471AP2/ERF domain
PROSITE profilePS5103222.919132190IPR001471AP2/ERF domain
PRINTSPR003675.0E-13133144IPR001471AP2/ERF domain
PRINTSPR003675.0E-13172192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDSCCNLSPQ DPFQDVSSPF GFEYWESSLP IDMNPPPPPF TFLDSDEMHL LSSLLDLDSS  60
ASASSPSSVS NEPGCWIPDE REITSASKQG KSRKREGKGA TPAAKRENPA DECEEDTVNP  120
ASKQKLKSGK SSYRGVRKRP WGKFAAEIRD STRNGVRVWL GTFDSAETAA LAYDQAAFAI  180
RGSTAVLNFP EEIVKHSLEG MIRIGSDDCD DGCSPVLALK KKHSTKRRSM SSGKPVSKDE  240
EEESVVVVLQ DLGSEYLEEL LMSSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27133190360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567928.11e-54PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC84e-52ERF92_ARATH; Ethylene-responsive transcription factor 1B
STRINGPGSC0003DMT4000266271e-52(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-48ethylene response factor 1